No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.3 (1,1:430)  417  0.00 0.00 0.00  UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1        1   428 (74)  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   (70)   431     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   501 
   74    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1     4 
   78  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   424 
  110    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1    40 
  122  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   380 
  130    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1    60 
  146  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   356 
  166    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1    96 
  190  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   312 
  210    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1   140 
  222  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   280 
  370    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1   300 
  374  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1   128 
  446    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1   376 
  450  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1    52 
  478    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1   408 
  482  C UCD032R_A09_BE399200Td05P036H09P028D071R1_079.ab1    20 
  486    UCD032F_A09_BE399200Td05P036H09P028D071F1_079.ab1   416 
Contig length: old 572, new 572

Contig length: old 572, new 572
New start: 0