No. words: 1252; after pruning: 1226


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:463)  458  0.00 0.22 0.00  UCD025F_A12_BE403167LD09P028H06P028H121F1_096.ab1        1   464 (132)  C UCD025R_A12_BE403167LD09P028H06P028H121R1_096.ab1   (191)   465     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD025R_A12_BE403167LD09P028H06P028H121R1_096.ab1   656 
  487    UCD025F_A12_BE403167LD09P028H06P028H121F1_096.ab1   295 
  531  C UCD025R_A12_BE403167LD09P028H06P028H121R1_096.ab1   126 
  563    UCD025F_A12_BE403167LD09P028H06P028H121F1_096.ab1   371 
  579  C UCD025R_A12_BE403167LD09P028H06P028H121R1_096.ab1    78 
  583    UCD025F_A12_BE403167LD09P028H06P028H121F1_096.ab1   391 
  603  C UCD025R_A12_BE403167LD09P028H06P028H121R1_096.ab1    54 
  627    UCD025F_A12_BE403167LD09P028H06P028H121F1_096.ab1   435 
Contig length: old 788, new 788

Contig length: old 788, new 788
New start: 0