No. words: 1203; after pruning: 1177


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:686)  486  0.58 0.19 0.00  UCD016F_A01_BE403506TU02P012A06A121F1_015.ab1      117   631 (0)  C UCD016R_A01_BE403506TU02P012A06A121R1_015.ab1   (0)   572    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    UCD016F_A01_BE403506TU02P012A06A121F1_015.ab1     1 
  280  C UCD016R_A01_BE403506TU02P012A06A121R1_015.ab1   409 
  288    UCD016F_A01_BE403506TU02P012A06A121F1_015.ab1   288 
  388  C UCD016R_A01_BE403506TU02P012A06A121R1_015.ab1   300 
  396    UCD016F_A01_BE403506TU02P012A06A121F1_015.ab1   396 
  404  C UCD016R_A01_BE403506TU02P012A06A121R1_015.ab1   284 
  452    UCD016F_A01_BE403506TU02P012A06A121F1_015.ab1   452 
  456  C UCD016R_A01_BE403506TU02P012A06A121R1_015.ab1   232 
  468    UCD016F_A01_BE403506TU02P012A06A121F1_015.ab1   468 
  472  C UCD016R_A01_BE403506TU02P012A06A121R1_015.ab1   216 
Contig length: old 687, new 687

Contig length: old 687, new 687
New start: 0