No. words: 520; after pruning: 494


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.4 (1,1:325)  152  0.62 0.00 0.00  UCD032F_A06_BE403506Ta13P012A06P036E081F1_048.ab1      165   326 (32)  C UCD032R_A06_BE403506Ta13P012A06P036E081R1_048.ab1   (0)   162     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    UCD032F_A06_BE403506Ta13P012A06P036E081F1_048.ab1     1 
  204  C UCD032R_A06_BE403506Ta13P012A06P036E081R1_048.ab1   123 
  212    UCD032F_A06_BE403506Ta13P012A06P036E081F1_048.ab1   212 
  216  C UCD032R_A06_BE403506Ta13P012A06P036E081R1_048.ab1   111 
  224    UCD032F_A06_BE403506Ta13P012A06P036E081F1_048.ab1   224 
  228  C UCD032R_A06_BE403506Ta13P012A06P036E081R1_048.ab1    99 
  260    UCD032F_A06_BE403506Ta13P012A06P036E081F1_048.ab1   260 
  264  C UCD032R_A06_BE403506Ta13P012A06P036E081R1_048.ab1    63 
  284    UCD032F_A06_BE403506Ta13P012A06P036E081F1_048.ab1   284 
  288  C UCD032R_A06_BE403506Ta13P012A06P036E081R1_048.ab1    39 
  312    UCD032F_A06_BE403506Ta13P012A06P036E081F1_048.ab1   312 
Contig length: old 358, new 358

Contig length: old 358, new 358
New start: 0