No. words: 1609; after pruning: 1583


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:839)  746  0.00 0.00 0.00  UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1       92   840 (20)  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   (0)   749     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1     1 
  263  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   578 
  271    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   271 
  383  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   458 
  391    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   391 
  411  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   430 
  423    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   423 
  439  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   402 
  447    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   447 
  459  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   382 
  467    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   467 
  515  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   326 
  519    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   519 
  523  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   318 
  619    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   619 
  623  C UCD004R_A01_BE403597TU01P012A02A081R1_015.ab1   218 
  835    UCD004F_A01_BE403597TU01P012A02A081F1_015.ab1   835 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0