No. words: 1572; after pruning: 1546


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:744)  725  0.27 0.00 0.00  UCD005F_G06_BE406908AS01P012F05F111F1_036.ab1        1   745 (51)  C UCD005R_G06_BE406908AS01P012F05F111R1_036.ab1   (31)   745     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C UCD005R_G06_BE406908AS01P012F05F111R1_036.ab1   776 
   35    UCD005F_G06_BE406908AS01P012F05F111F1_036.ab1     4 
  149  C UCD005R_G06_BE406908AS01P012F05F111R1_036.ab1   628 
  153    UCD005F_G06_BE406908AS01P012F05F111F1_036.ab1   122 
  477  C UCD005R_G06_BE406908AS01P012F05F111R1_036.ab1   300 
  585    UCD005F_G06_BE406908AS01P012F05F111F1_036.ab1   554 
  593  C UCD005R_G06_BE406908AS01P012F05F111R1_036.ab1   184 
  629    UCD005F_G06_BE406908AS01P012F05F111F1_036.ab1   598 
  637  C UCD005R_G06_BE406908AS01P012F05F111R1_036.ab1   140 
  669    UCD005F_G06_BE406908AS01P012F05F111F1_036.ab1   638 
  673  C UCD005R_G06_BE406908AS01P012F05F111R1_036.ab1   104 
  773    UCD005F_G06_BE406908AS01P012F05F111F1_036.ab1   742 
Contig length: old 827, new 827

Contig length: old 827, new 827
New start: 0