No. words: 1291; after pruning: 1265


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:591)  574  0.00 0.00 0.17  UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1        1   592 (56)  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   (52)   591     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   643 
   65    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1    13 
  129  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   515 
  133    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1    81 
  229  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   415 
  281    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   229 
  405  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   239 
  413    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   361 
  417  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   227 
  441    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   389 
  461  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   183 
  481    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   429 
  493  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   151 
  497    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   445 
  501  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   143 
  513    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   461 
  521  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1   123 
  545    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   493 
  549  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1    95 
  565    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   513 
  577  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1    67 
  589    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   537 
  601  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1    43 
  605    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   553 
  613  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1    31 
  625    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   573 
  634  C UCD024R_D07_BE444541AT02P028F03P028F091R1_057.ab1    11 
  638    UCD024F_D07_BE444541AT02P028F03P028F091F1_057.ab1   586 
Contig length: old 699, new 700

Contig length: old 700, new 700
New start: 0