No. words: 1292; after pruning: 1266


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:563)  540  0.18 0.00 0.53  UCD024F_C11_BE444541LD07P028F03P028F091F1_091.ab1        1   566 (113)  C UCD024R_C11_BE444541LD07P028F03P028F091R1_091.ab1   (50)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C UCD024R_C11_BE444541LD07P028F03P028F091R1_091.ab1   613 
   60    UCD024F_C11_BE444541LD07P028F03P028F091F1_091.ab1    10 
  124  C UCD024R_C11_BE444541LD07P028F03P028F091R1_091.ab1   490 
  144    UCD024F_C11_BE444541LD07P028F03P028F091F1_091.ab1    94 
Contig length: old 728, new 729

Contig length: old 729, new 729
New start: 0 
S Change at: 56; seg lengths: entry 1, contig 1