No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:302)  269  2.97 0.00 0.00  UCD003F_A12_BE444599LD06P001H06H121F1_085.ab1        1   303 (208)  C UCD003R_A12_BE444599LD06P001H06H121R1_085.ab1   (225)   303     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1  C UCD003R_A12_BE444599LD06P001H06H121R1_085.ab1   528 
  247    UCD003F_A12_BE444599LD06P001H06H121F1_085.ab1    22 
  251  C UCD003R_A12_BE444599LD06P001H06H121R1_085.ab1   278 
  355    UCD003F_A12_BE444599LD06P001H06H121F1_085.ab1   130 
  363  C UCD003R_A12_BE444599LD06P001H06H121R1_085.ab1   166 
  493    UCD003F_A12_BE444599LD06P001H06H121F1_085.ab1   268 
  509  C UCD003R_A12_BE444599LD06P001H06H121R1_085.ab1    20 
  525    UCD003F_A12_BE444599LD06P001H06H121F1_085.ab1   300 
Contig length: old 736, new 736

Contig length: old 736, new 736
New start: 0