No. words: 1385; after pruning: 1359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.8 (1,1:1173)  196  1.42 0.00 0.00  UCD006R_G09_BE445431LD01P012C05P012C111F1_067.ab1      507   717 (0)  C UCD006F_G09_BE445431LD01P012C05P012C111F1_067.ab1   (0)   668   458 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  100 nodes

 52 str. conn. components

Path
    1    UCD006R_G09_BE445431LD01P012C05P012C111F1_067.ab1     1 
  536  C UCD006F_G09_BE445431LD01P012C05P012C111F1_067.ab1   639 
  547    UCD006R_G09_BE445431LD01P012C05P012C111F1_067.ab1   547 
  575  C UCD006F_G09_BE445431LD01P012C05P012C111F1_067.ab1   600 
Contig length: old 1174, new 1174

Contig length: old 1174, new 1174
New start: 0