No. words: 1175; after pruning: 1149


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:526)  509  0.57 0.00 0.00  UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1        1   527 (31)  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   (90)   527     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   617 
  106    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1    16 
  110  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   508 
  162    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1    72 
  166  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   452 
  186    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1    96 
  194  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   424 
  234    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   144 
  238  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   380 
  246    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   156 
  274  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   344 
  290    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   200 
  350  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   268 
  354    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   264 
  366  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   252 
  374    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   284 
  394  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   224 
  406    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   316 
  478  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1   140 
  486    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   396 
  542  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1    76 
  546    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   456 
  610  C UCD015R_F06_BE445431Sn32P012C05P025B091R1_038.ab1     8 
  614    UCD015F_F06_BE445431Sn32P012C05P025B091F1_038.ab1   524 
Contig length: old 648, new 648

Contig length: old 648, new 648
New start: 0