No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.5 (1,1:597)  577  0.00 0.17 0.17  UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1        1   595 (45)  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   (49)   598     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   647 
   93    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1    43 
   97  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   551 
  153    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   103 
  185  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   463 
  213    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   163 
  281  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   367 
  301    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   251 
  333  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   315 
  393    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   343 
  433  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   215 
  493    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   443 
  501  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   147 
  505    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   455 
  525  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   123 
  537    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   487 
  545  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1   103 
  553    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   503 
  561  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1    87 
  569    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   519 
  573  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1    75 
  581    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   531 
  593  C UCD015R_C05_BE445431Ta17P012C05P025B091R1_043.ab1    55 
  605    UCD015F_C05_BE445431Ta17P012C05P025B091F1_043.ab1   555 
Contig length: old 689, new 690

Contig length: old 690, new 690
New start: 0