No. words: 1670; after pruning: 1644


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:1039)  608  0.16 0.00 0.16  UCD002F_C08_BE488220TU02P001B03B091F1_054.ab1      145   774 (0)  C UCD002R_C08_BE488220TU02P001B03B091R1_054.ab1   (0)   896   268 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1    UCD002F_C08_BE488220TU02P001B03B091F1_054.ab1     1 
  456  C UCD002R_C08_BE488220TU02P001B03B091R1_054.ab1   586 
  460    UCD002F_C08_BE488220TU02P001B03B091F1_054.ab1   460 
  468  C UCD002R_C08_BE488220TU02P001B03B091R1_054.ab1   574 
  472    UCD002F_C08_BE488220TU02P001B03B091F1_054.ab1   472 
  484  C UCD002R_C08_BE488220TU02P001B03B091R1_054.ab1   558 
  488    UCD002F_C08_BE488220TU02P001B03B091F1_054.ab1   488 
  492  C UCD002R_C08_BE488220TU02P001B03B091R1_054.ab1   550 
  496    UCD002F_C08_BE488220TU02P001B03B091F1_054.ab1   496 
  504  C UCD002R_C08_BE488220TU02P001B03B091R1_054.ab1   538 
  516    UCD002F_C08_BE488220TU02P001B03B091F1_054.ab1   516 
  528  C UCD002R_C08_BE488220TU02P001B03B091R1_054.ab1   514 
Contig length: old 1040, new 1041

Contig length: old 1041, new 1041
New start: 0