No. words: 1056; after pruning: 1016


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 4.4 (1,1:253)  228  0.80 0.40 0.00  UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1        3   253 (505)  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   (46)   252     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  120 nodes

 62 str. conn. components

Path
    1  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   298 
   54    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1    10 
   74  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   225 
   86    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1    42 
   90  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   209 
  100    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1    56 
  120  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   179 
  128    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1    84 
  156  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   143 
  160    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1   116 
  176  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   123 
  180    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1   136 
  188  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1   111 
  208    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1   164 
  229  C UCD003R_E01_BE488358AS01P001E04E101R1_003.ab1    69 
  293    UCD003F_E01_BE488358AS01P001E04E101F1_003.ab1   249 
Contig length: old 802, new 802

Contig length: old 802, new 802
New start: 0