No. words: 1591; after pruning: 1552


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.9 (1,1:664)  652  0.00 0.00 0.15  UCD016F_A12_BE489901AT02P012B04B101F1_096.ab1        2   665 (34)  C UCD016R_A12_BE489901AT02P012B04B101R1_096.ab1   (39)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C UCD016R_A12_BE489901AT02P012B04B101R1_096.ab1   702 
   47    UCD016F_A12_BE489901AT02P012B04B101F1_096.ab1     9 
  359  C UCD016R_A12_BE489901AT02P012B04B101R1_096.ab1   344 
  363    UCD016F_A12_BE489901AT02P012B04B101F1_096.ab1   325 
  391  C UCD016R_A12_BE489901AT02P012B04B101R1_096.ab1   312 
  399    UCD016F_A12_BE489901AT02P012B04B101F1_096.ab1   361 
  403  C UCD016R_A12_BE489901AT02P012B04B101R1_096.ab1   300 
  411    UCD016F_A12_BE489901AT02P012B04B101F1_096.ab1   373 
  423  C UCD016R_A12_BE489901AT02P012B04B101R1_096.ab1   280 
  603    UCD016F_A12_BE489901AT02P012B04B101F1_096.ab1   565 
  607  C UCD016R_A12_BE489901AT02P012B04B101R1_096.ab1    96 
  693    UCD016F_A12_BE489901AT02P012B04B101F1_096.ab1   656 
Contig length: old 736, new 736

Contig length: old 736, new 737
New start: 0 
I Change at: 663; seg lengths: entry 1, contig 0