No. words: 1588; after pruning: 1562


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:665)  646  0.60 0.00 0.00  UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1        1   666 (71)  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1   (185)   666     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1   851 
  206    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1    21 
  218  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1   634 
  222    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1    37 
  230  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1   622 
  289    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1   104 
  293  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1   559 
  305    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1   120 
  425  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1   427 
  433    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1   248 
  457  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1   395 
  753    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1   568 
  761  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1    91 
  773    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1   588 
  777  C UCD004R_H05_BE489901LD04P012B04B101R1_033.ab1    75 
  829    UCD004F_H05_BE489901LD04P012B04B101F1_033.ab1   644 
Contig length: old 922, new 922

Contig length: old 922, new 922
New start: 0 
S Change at: 835; seg lengths: entry 1, contig 1
S Change at: 844; seg lengths: entry 1, contig 1