No. words: 1050; after pruning: 1024


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.2 (1,1:859)  174  0.00 0.00 0.00  UCD029F_F04_BE490763Sn32P025C11P036B031F1_022.ab1      131   320 (0)  C UCD029R_F04_BE490763Sn32P025C11P036B031R1_022.ab1   (0)   730   541 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1    UCD029F_F04_BE490763Sn32P025C11P036B031F1_022.ab1     1 
  187  C UCD029R_F04_BE490763Sn32P025C11P036B031R1_022.ab1   674 
  195    UCD029F_F04_BE490763Sn32P025C11P036B031F1_022.ab1   195 
  203  C UCD029R_F04_BE490763Sn32P025C11P036B031R1_022.ab1   658 
  211    UCD029F_F04_BE490763Sn32P025C11P036B031F1_022.ab1   211 
  227  C UCD029R_F04_BE490763Sn32P025C11P036B031R1_022.ab1   634 
  255    UCD029F_F04_BE490763Sn32P025C11P036B031F1_022.ab1   255 
  259  C UCD029R_F04_BE490763Sn32P025C11P036B031R1_022.ab1   602 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0