No. words: 1643; after pruning: 1617


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:1004)  606  0.16 0.00 0.00  UCD015F_E07_BE490763Td07P025H10P012G121F1_055.ab1      146   783 (0)  C UCD015R_E07_BE490763Td07P025H10P012G121R1_055.ab1   (0)   860   223 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1    UCD015F_E07_BE490763Td07P025H10P012G121F1_055.ab1     1 
  478  C UCD015R_E07_BE490763Td07P025H10P012G121R1_055.ab1   528 
  490    UCD015F_E07_BE490763Td07P025H10P012G121F1_055.ab1   490 
  498  C UCD015R_E07_BE490763Td07P025H10P012G121R1_055.ab1   508 
  502    UCD015F_E07_BE490763Td07P025H10P012G121F1_055.ab1   502 
  506  C UCD015R_E07_BE490763Td07P025H10P012G121R1_055.ab1   500 
  514    UCD015F_E07_BE490763Td07P025H10P012G121F1_055.ab1   514 
  518  C UCD015R_E07_BE490763Td07P025H10P012G121R1_055.ab1   488 
  526    UCD015F_E07_BE490763Td07P025H10P012G121F1_055.ab1   526 
  550  C UCD015R_E07_BE490763Td07P025H10P012G121R1_055.ab1   456 
Contig length: old 1005, new 1005

Contig length: old 1005, new 1005
New start: 0