No. words: 1003; after pruning: 951


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    2    0.0 0.5 (1,1:234)  111  1.57 0.00 0.00  UCD010R_E05_BE495991Td09P021G04P025D121R1_039.ab1        1   127 (2)  C UCD020F_E05_BE495991Td09P021G04P025D121F2_039.ab1   (66)   235   109 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (2,1:220)  276  0.35 0.00 0.00  UCD020F_E05_BE495991Td09P021G04P025D121F2_039.ab1       15   301 (0)    UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1        1   287 (7) *
Merge:(0)    3    0.0 4.8 (3,1:5)  209  0.00 0.00 0.00  UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1        1   216 (78)  C UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1   (63)   216     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       4 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  526 nodes

 133 str. conn. components

Path
    1  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1   294 
   39  C UCD020F_E05_BE495991Td09P021G04P025D121F2_039.ab1   270 
   43  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1   252 
   47  C UCD020F_E05_BE495991Td09P021G04P025D121F2_039.ab1   262 
  107    UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1    29 
  111  C UCD020F_E05_BE495991Td09P021G04P025D121F2_039.ab1   198 
  127  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1   168 
  187    UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1   109 
  195  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1   100 
  199    UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1   121 
  207  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1    88 
  219    UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1   141 
  227  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1    68 
  235    UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1   157 
  243  C UCD020F_E05_BE495991Td09P021G04P025D121F2_039.ab1    66 
  255  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1    40 
  259    UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1   181 
  263  C UCD010F_E05_BE495991Td09P021G04P025D121F1_039.ab1    32 
  271    UCD020R_E05_BE495991Td09P021G04P025D121R2_039.ab1   193 
Contig length: old 357, new 357

Contig length: old 357, new 357
New start: 0