No. words: 1056; after pruning: 1030


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:356)  337  0.00 0.28 0.00  UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1        1   357 (163)  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1   (178)   358     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1   536 
  248    UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1    69 
  260  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1   277 
  268    UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1    89 
  272  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1   265 
  296    UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1   117 
  308  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1   229 
  320    UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1   141 
  324  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1   213 
  380    UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1   201 
  440  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1    97 
  448    UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1   269 
  504  C UCD024R_B06_BE498371LD06P028A06P028A121R1_046.ab1    33 
  516    UCD024F_B06_BE498371LD06P028A06P028A121F1_046.ab1   337 
Contig length: old 699, new 699

Contig length: old 699, new 699
New start: 0