No. words: 1418; after pruning: 1392


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:691)  670  0.00 0.00 0.00  UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1        1   692 (23)  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   (11)   692     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   703 
   35    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1    24 
  175  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   529 
  179    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   168 
  227  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   477 
  239    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   228 
  247  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   457 
  259    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   248 
  271  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   433 
  291    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   280 
  299  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   405 
  303    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   292 
  307  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   397 
  507    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   496 
  511  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1   193 
  671    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   660 
  675  C UCD003R_E03_BE498566TU02P001B06B121R1_019.ab1    29 
  691    UCD003F_E03_BE498566TU02P001B06B121F1_019.ab1   680 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0