No. words: 1182; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:450)  430  0.00 0.22 0.22  UCD017F_F12_BE498730LD02P028G02G081F1_086.ab1        1   451 (141)  C UCD017R_F12_BE498730LD02P028G02G081R1_086.ab1   (139)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C UCD017R_F12_BE498730LD02P028G02G081R1_086.ab1   590 
  184    UCD017F_F12_BE498730LD02P028G02G081F1_086.ab1    44 
  232  C UCD017R_F12_BE498730LD02P028G02G081R1_086.ab1   359 
  244    UCD017F_F12_BE498730LD02P028G02G081F1_086.ab1   104 
  256  C UCD017R_F12_BE498730LD02P028G02G081R1_086.ab1   335 
  260    UCD017F_F12_BE498730LD02P028G02G081F1_086.ab1   120 
  408  C UCD017R_F12_BE498730LD02P028G02G081R1_086.ab1   183 
  472    UCD017F_F12_BE498730LD02P028G02G081F1_086.ab1   332 
Contig length: old 731, new 732

Contig length: old 732, new 732
New start: 0