No. words: 1034; after pruning: 964


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.2 (1,1:346)  315  0.29 0.29 0.58  UCD006R_A04_BE499144LD01P001D02P001D081F1_032.ab1        1   346 (205)  C UCD006F_A04_BE499144LD01P001D02P001D081F1_032.ab1   (136)   347     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C UCD006F_A04_BE499144LD01P001D02P001D081F1_032.ab1   483 
  366    UCD006R_A04_BE499144LD01P001D02P001D081F1_032.ab1   229 
  430  C UCD006F_A04_BE499144LD01P001D02P001D081F1_032.ab1    54 
  434    UCD006R_A04_BE499144LD01P001D02P001D081F1_032.ab1   297 
Contig length: old 687, new 688

Contig length: old 688, new 688
New start: 0 
S Change at: 481; seg lengths: entry 1, contig 1
S Change at: 507; seg lengths: entry 1, contig 1
S Change at: 512; seg lengths: entry 1, contig 1
S Change at: 523; seg lengths: entry 1, contig 1