No. words: 1010; after pruning: 970


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.4 (1,1:344)  312  0.29 0.00 0.87  UCD006R_C04_BE499144LD03P001D02P001D081F1_028.ab1        1   346 (189)  C UCD006F_C04_BE499144LD03P001D02P001D081F1_028.ab1   (131)   344     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C UCD006F_C04_BE499144LD03P001D02P001D081F1_028.ab1   475 
  355    UCD006R_C04_BE499144LD03P001D02P001D081F1_028.ab1   224 
  439  C UCD006F_C04_BE499144LD03P001D02P001D081F1_028.ab1    37 
  443    UCD006R_C04_BE499144LD03P001D02P001D081F1_028.ab1   312 
Contig length: old 665, new 666

Contig length: old 666, new 665
New start: 0 
D Change at: 469; seg lengths: entry 3, contig 4