No. words: 1035; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:354)  323  0.28 0.00 0.84  UCD006R_H04_BE499144LD08P001D02P001D081F1_018.ab1        1   357 (190)  C UCD006F_H04_BE499144LD08P001D02P001D081F1_018.ab1   (134)   354     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C UCD006F_H04_BE499144LD08P001D02P001D081F1_018.ab1   488 
  254    UCD006R_H04_BE499144LD08P001D02P001D081F1_018.ab1   120 
  350  C UCD006F_H04_BE499144LD08P001D02P001D081F1_018.ab1   139 
  366    UCD006R_H04_BE499144LD08P001D02P001D081F1_018.ab1   232 
  386  C UCD006F_H04_BE499144LD08P001D02P001D081F1_018.ab1   103 
  394    UCD006R_H04_BE499144LD08P001D02P001D081F1_018.ab1   260 
  434  C UCD006F_H04_BE499144LD08P001D02P001D081F1_018.ab1    55 
  438    UCD006R_H04_BE499144LD08P001D02P001D081F1_018.ab1   304 
Contig length: old 680, new 681

Contig length: old 681, new 681
New start: 0 
S Change at: 484; seg lengths: entry 1, contig 1