No. words: 1210; after pruning: 1184


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.5 (1,1:551)  537  0.36 0.00 0.00  UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1        1   550 (51)  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1   (57)   552     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1   609 
  114    UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1    57 
  118  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1   492 
  126    UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1    69 
  134  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1   476 
  142    UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1    85 
  150  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1   460 
  502    UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1   445 
  506  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1   104 
  522    UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1   465 
  530  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1    80 
  574    UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1   517 
  578  C UCD017R_F07_BE499478AS01P028B02B081R1_053.ab1    32 
  586    UCD017F_F07_BE499478AS01P028B02B081F1_053.ab1   529 
Contig length: old 658, new 658

Contig length: old 658, new 658
New start: 0