No. words: 1314; after pruning: 1288


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:552)  541  0.36 0.00 0.00  UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1        1   553 (177)  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1   (31)   553     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1   584 
   35    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1     4 
   75  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1   510 
   91    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1    60 
  119  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1   466 
  123    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1    92 
  195  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1   390 
  203    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1   172 
  251  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1   334 
  271    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1   240 
  295  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1   290 
  467    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1   436 
  491  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1    94 
  507    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1   476 
  511  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1    74 
  544    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1   513 
  548  C UCD017R_A09_BE499478LD08P028B02B081R1_079.ab1    37 
  556    UCD017F_A09_BE499478LD08P028B02B081F1_079.ab1   525 
Contig length: old 761, new 761

Contig length: old 761, new 761
New start: 0