No. words: 1201; after pruning: 1175


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:545)  533  0.37 0.00 0.00  UCD017F_H05_BE500206AS02P028G01G071F1_033.ab1        1   546 (53)  C UCD017R_H05_BE500206AS02P028G01G071R1_033.ab1   (56)   546     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C UCD017R_H05_BE500206AS02P028G01G071R1_033.ab1   602 
  117    UCD017F_H05_BE500206AS02P028G01G071F1_033.ab1    61 
  125  C UCD017R_H05_BE500206AS02P028G01G071R1_033.ab1   478 
  177    UCD017F_H05_BE500206AS02P028G01G071F1_033.ab1   121 
  189  C UCD017R_H05_BE500206AS02P028G01G071R1_033.ab1   414 
  305    UCD017F_H05_BE500206AS02P028G01G071F1_033.ab1   249 
  401  C UCD017R_H05_BE500206AS02P028G01G071R1_033.ab1   202 
  501    UCD017F_H05_BE500206AS02P028G01G071F1_033.ab1   445 
  521  C UCD017R_H05_BE500206AS02P028G01G071R1_033.ab1    82 
  529    UCD017F_H05_BE500206AS02P028G01G071F1_033.ab1   473 
Contig length: old 655, new 655

Contig length: old 655, new 655
New start: 0