No. words: 1282; after pruning: 1256


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:589)  577  0.00 0.17 0.00  UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1        1   590 (58)  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1   (43)   591     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1   634 
   61    UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1    17 
   65  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1   570 
   73    UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1    29 
   77  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1   558 
  157    UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1   113 
  277  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1   358 
  305    UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1   261 
  341  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1   294 
  549    UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1   505 
  557  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1    78 
  569    UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1   525 
  585  C UCD017R_A06_BE500206AT01P028G01G071R1_048.ab1    50 
  601    UCD017F_A06_BE500206AT01P028G01G071F1_048.ab1   557 
Contig length: old 692, new 692

Contig length: old 692, new 692
New start: 0