No. words: 1248; after pruning: 1208


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.9 (1,1:626)  513  0.19 0.19 0.00  UCD017F_H06_BE500206LD06P028G01G071F1_034.ab1        5   528 (0)  C UCD017R_H06_BE500206LD06P028G01G071R1_034.ab1   (96)   624   100 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C UCD017R_H06_BE500206LD06P028G01G071R1_034.ab1   720 
  114    UCD017F_H06_BE500206LD06P028G01G071F1_034.ab1    21 
  122  C UCD017R_H06_BE500206LD06P028G01G071R1_034.ab1   599 
  134    UCD017F_H06_BE500206LD06P028G01G071F1_034.ab1    41 
  142  C UCD017R_H06_BE500206LD06P028G01G071R1_034.ab1   579 
  150    UCD017F_H06_BE500206LD06P028G01G071F1_034.ab1    57 
  154  C UCD017R_H06_BE500206LD06P028G01G071R1_034.ab1   567 
  378    UCD017F_H06_BE500206LD06P028G01G071F1_034.ab1   285 
  450  C UCD017R_H06_BE500206LD06P028G01G071R1_034.ab1   271 
Contig length: old 720, new 720

Contig length: old 720, new 720
New start: 0 
S Change at: 110; seg lengths: entry 1, contig 1