No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.7 (1,1:448)  430  0.00 0.45 0.00  UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1        3   448 (62)  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1   (45)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1   493 
   69    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1    24 
   77  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1   417 
  217    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   172 
  221  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1   273 
  229    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   184 
  233  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1   261 
  373    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   328 
  381  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1   113 
  385    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   340 
  413  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1    81 
  421    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   376 
  433  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1    61 
  437    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   392 
  445  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1    49 
  453    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   408 
  461  C UCD034R_A05_BE500206Ta11P036H11P028G071R1_047.ab1    33 
  469    UCD034F_A05_BE500206Ta11P036H11P028G071F1_047.ab1   424 
Contig length: old 554, new 555

Contig length: old 555, new 555
New start: 0