No. words: 1011; after pruning: 985


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.1 (1,1:448)  430  0.00 0.45 0.00  UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1        3   448 (62)  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   (53)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   501 
  225    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   172 
  241  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   261 
  285    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   232 
  289  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   213 
  333    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   280 
  337  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   165 
  349    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   296 
  353  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   149 
  365    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   312 
  369  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   133 
  385    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   332 
  389  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   113 
  393    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   340 
  397  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1   105 
  401    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   348 
  405  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1    97 
  409    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   356 
  425  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1    77 
  429    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   376 
  441  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1    61 
  445    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   392 
  453  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1    49 
  457    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   404 
  469  C UCD034R_D05_BE500206Ta14P036H11P028G071R1_041.ab1    33 
  477    UCD034F_D05_BE500206Ta14P036H11P028G071F1_041.ab1   424 
Contig length: old 562, new 563

Contig length: old 563, new 563
New start: 0