No. words: 1015; after pruning: 989


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:448)  430  0.00 0.22 0.44  UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1        1   450 (54)  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   (62)   449     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   511 
  194    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   131 
  198  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   314 
  202    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   139 
  206  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   306 
  222    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   159 
  230  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   282 
  234    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   171 
  238  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   274 
  266    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   203 
  270  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   242 
  338    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   275 
  342  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   170 
  354    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   291 
  358  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   154 
  366    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   303 
  374  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   138 
  398    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   335 
  402  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1   110 
  406    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   343 
  426  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1    86 
  434    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   371 
  470  C UCD034R_A06_BE500206Ta19P036H11P028G071R1_048.ab1    42 
  478    UCD034F_A06_BE500206Ta19P036H11P028G071F1_048.ab1   415 
Contig length: old 566, new 567

Contig length: old 567, new 567
New start: 0