No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.5 (1,1:451)  430  0.00 0.45 0.00  UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1        6   451 (61)  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1   (44)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1   492 
   68    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1    27 
   76  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1   417 
  184    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   143 
  196  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1   297 
  212    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   171 
  236  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1   257 
  340    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   299 
  344  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1   149 
  360    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   319 
  364  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1   129 
  384    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   343 
  408  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1    85 
  412    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   371 
  432  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1    61 
  436    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   395 
  444  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1    49 
  452    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   411 
  456  C UCD034R_E06_BE500206Ta23P036H11P028G071R1_040.ab1    37 
  468    UCD034F_E06_BE500206Ta23P036H11P028G071F1_040.ab1   427 
Contig length: old 552, new 553

Contig length: old 553, new 553
New start: 0