No. words: 1571; after pruning: 1545


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:629)  599  0.00 0.16 0.16  UCD024F_G01_BE517872LD01P028B04P028B101F1_003.ab1        1   630 (144)  C UCD024R_G01_BE517872LD01P028B04P028B101R1_003.ab1   (167)   630     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCD024R_G01_BE517872LD01P028B04P028B101R1_003.ab1   797 
  685    UCD024F_G01_BE517872LD01P028B04P028B101F1_003.ab1   517 
  733  C UCD024R_G01_BE517872LD01P028B04P028B101R1_003.ab1    65 
  737    UCD024F_G01_BE517872LD01P028B04P028B101F1_003.ab1   569 
  749  C UCD024R_G01_BE517872LD01P028B04P028B101R1_003.ab1    49 
  753    UCD024F_G01_BE517872LD01P028B04P028B101F1_003.ab1   585 
  777  C UCD024R_G01_BE517872LD01P028B04P028B101R1_003.ab1    22 
  781    UCD024F_G01_BE517872LD01P028B04P028B101F1_003.ab1   613 
Contig length: old 941, new 942

Contig length: old 942, new 942
New start: 0