No. words: 1545; after pruning: 1519


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.8 (1,1:644)  628  0.16 0.00 0.00  UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1        1   643 (189)  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   (68)   645     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   713 
   72    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1     4 
   94  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   620 
   98    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1    30 
  110  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   604 
  114    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1    46 
  142  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   572 
  146    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1    78 
  198  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   516 
  206    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1   138 
  558  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   156 
  562    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1   494 
  594  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   120 
  598    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1   530 
  602  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1   112 
  614    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1   546 
  626  C UCD005R_D10_BE605258LD02P012H02H081R1_074.ab1    88 
  634    UCD005F_D10_BE605258LD02P012H02H081F1_074.ab1   566 
Contig length: old 900, new 900

Contig length: old 900, new 900
New start: 0