No. words: 959; after pruning: 933


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:415)  399  0.24 0.00 0.00  UCD031F_C03_BF145580Sn25P012E02P036F041F1_027.ab1        1   416 (72)  C UCD031R_C03_BF145580Sn25P012E02P036F041R1_027.ab1   (55)   416     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C UCD031R_C03_BF145580Sn25P012E02P036F041R1_027.ab1   471 
   91    UCD031F_C03_BF145580Sn25P012E02P036F041F1_027.ab1    36 
   95  C UCD031R_C03_BF145580Sn25P012E02P036F041R1_027.ab1   377 
  139    UCD031F_C03_BF145580Sn25P012E02P036F041F1_027.ab1    84 
  143  C UCD031R_C03_BF145580Sn25P012E02P036F041R1_027.ab1   329 
  179    UCD031F_C03_BF145580Sn25P012E02P036F041F1_027.ab1   124 
  195  C UCD031R_C03_BF145580Sn25P012E02P036F041R1_027.ab1   277 
  203    UCD031F_C03_BF145580Sn25P012E02P036F041F1_027.ab1   148 
  223  C UCD031R_C03_BF145580Sn25P012E02P036F041R1_027.ab1   249 
  430    UCD031F_C03_BF145580Sn25P012E02P036F041F1_027.ab1   375 
  434  C UCD031R_C03_BF145580Sn25P012E02P036F041R1_027.ab1    38 
  462    UCD031F_C03_BF145580Sn25P012E02P036F041F1_027.ab1   407 
Contig length: old 543, new 543

Contig length: old 543, new 543
New start: 0