No. words: 1173; after pruning: 1147


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:1012)  145  1.25 0.00 0.00  UCD019F_D08_BF428792AS02P028G05G111F1_058.ab1      317   476 (0)  C UCD019R_D08_BF428792AS02P028G05G111R1_058.ab1   (0)   697   538 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    UCD019F_D08_BF428792AS02P028G05G111F1_058.ab1     1 
  324  C UCD019R_D08_BF428792AS02P028G05G111R1_058.ab1   690 
  332    UCD019F_D08_BF428792AS02P028G05G111F1_058.ab1   332 
  336  C UCD019R_D08_BF428792AS02P028G05G111R1_058.ab1   678 
  344    UCD019F_D08_BF428792AS02P028G05G111F1_058.ab1   344 
  348  C UCD019R_D08_BF428792AS02P028G05G111R1_058.ab1   666 
  356    UCD019F_D08_BF428792AS02P028G05G111F1_058.ab1   356 
  380  C UCD019R_D08_BF428792AS02P028G05G111R1_058.ab1   634 
  416    UCD019F_D08_BF428792AS02P028G05G111F1_058.ab1   416 
  420  C UCD019R_D08_BF428792AS02P028G05G111R1_058.ab1   594 
Contig length: old 1013, new 1013

Contig length: old 1013, new 1013
New start: 0