No. words: 955; after pruning: 929


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.4 (1,1:424)  402  0.00 0.00 0.24  UCD028F_G04_BF473744Td07P025G09P036H021F1_020.ab1        1   423 (55)  C UCD028R_G04_BF473744Td07P025G09P036H021R1_020.ab1   (53)   424     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C UCD028R_G04_BF473744Td07P025G09P036H021R1_020.ab1   477 
  101    UCD028F_G04_BF473744Td07P025G09P036H021F1_020.ab1    48 
  113  C UCD028R_G04_BF473744Td07P025G09P036H021R1_020.ab1   365 
  133    UCD028F_G04_BF473744Td07P025G09P036H021F1_020.ab1    80 
  157  C UCD028R_G04_BF473744Td07P025G09P036H021R1_020.ab1   321 
  169    UCD028F_G04_BF473744Td07P025G09P036H021F1_020.ab1   116 
  193  C UCD028R_G04_BF473744Td07P025G09P036H021R1_020.ab1   285 
  213    UCD028F_G04_BF473744Td07P025G09P036H021F1_020.ab1   160 
  229  C UCD028R_G04_BF473744Td07P025G09P036H021R1_020.ab1   249 
  361    UCD028F_G04_BF473744Td07P025G09P036H021F1_020.ab1   308 
  369  C UCD028R_G04_BF473744Td07P025G09P036H021R1_020.ab1   109 
  429    UCD028F_G04_BF473744Td07P025G09P036H021F1_020.ab1   376 
Contig length: old 530, new 531

Contig length: old 531, new 531
New start: 0