No. words: 964; after pruning: 938


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.6 (1,1:408)  388  0.99 0.25 0.00  UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1        5   409 (138)  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   (11)   406     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   417 
   27    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1    19 
   59  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   359 
   63    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1    55 
   71  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   347 
   79    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1    71 
   87  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   331 
   91    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1    83 
  103  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   315 
  119    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   111 
  123  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   295 
  127    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   119 
  139  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   279 
  143    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   135 
  155  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   263 
  179    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   171 
  183  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   235 
  215    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   207 
  295  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   123 
  303    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   295 
  307  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1   111 
  327    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   319 
  339  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1    79 
  343    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   335 
  385  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1    33 
  389    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   381 
  393  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1    25 
  397    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   389 
  401  C UCD018R_C07_BF483083LD04P028C03C091R1_059.ab1    17 
  405    UCD018F_C07_BF483083LD04P028C03C091F1_059.ab1   397 
Contig length: old 555, new 555

Contig length: old 555, new 554
New start: 0 
D Change at: 19; seg lengths: entry 4, contig 5