No. words: 1058; after pruning: 1019


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.4 (1,1:371)  357  0.00 0.27 0.00  UCD013F_B06_BG274019Sn24P025D04P012F081F1_046.ab1        1   368 (42)  C UCD013R_B06_BG274019Sn24P025D04P012F081R1_046.ab1   (40)   373     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C UCD013R_B06_BG274019Sn24P025D04P012F081R1_046.ab1   413 
   76    UCD013F_B06_BG274019Sn24P025D04P012F081F1_046.ab1    35 
   80  C UCD013R_B06_BG274019Sn24P025D04P012F081R1_046.ab1   334 
   84    UCD013F_B06_BG274019Sn24P025D04P012F081F1_046.ab1    43 
   96  C UCD013R_B06_BG274019Sn24P025D04P012F081R1_046.ab1   318 
  156    UCD013F_B06_BG274019Sn24P025D04P012F081F1_046.ab1   115 
  256  C UCD013R_B06_BG274019Sn24P025D04P012F081R1_046.ab1   158 
  296    UCD013F_B06_BG274019Sn24P025D04P012F081F1_046.ab1   255 
Contig length: old 451, new 451

Contig length: old 451, new 451
New start: 0