No. words: 1127; after pruning: 1101


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:503)  480  0.00 0.00 0.20  UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1        1   504 (61)  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   (59)   503     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   562 
   67    UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1     8 
   75  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   488 
   87    UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1    28 
   95  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   468 
   99    UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1    40 
  115  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   448 
  123    UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1    64 
  139  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   424 
  151    UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1    92 
  171  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   392 
  179    UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1   120 
  199  C UCD008R_B09_BG274365Sn26P001H04P021C081F1_077.ab1   364 
  203    UCD008F_B09_BG274365Sn26P001H04P021C081F1_077.ab1   144 
Contig length: old 623, new 624

Contig length: old 624, new 624
New start: 0