No. words: 998; after pruning: 972


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:474)  365  0.53 0.00 0.00  UCD017F_B04_BG604910LD02P028E01E071F1_030.ab1        1   378 (0)  C UCD017R_B04_BG604910LD02P028E01E071R1_030.ab1   (145)   475    98 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1  C UCD017R_B04_BG604910LD02P028E01E071R1_030.ab1   620 
  266    UCD017F_B04_BG604910LD02P028E01E071F1_030.ab1   121 
  302  C UCD017R_B04_BG604910LD02P028E01E071R1_030.ab1   319 
  310    UCD017F_B04_BG604910LD02P028E01E071F1_030.ab1   165 
  326  C UCD017R_B04_BG604910LD02P028E01E071R1_030.ab1   295 
  350    UCD017F_B04_BG604910LD02P028E01E071F1_030.ab1   205 
  354  C UCD017R_B04_BG604910LD02P028E01E071R1_030.ab1   267 
  378    UCD017F_B04_BG604910LD02P028E01E071F1_030.ab1   233 
  386  C UCD017R_B04_BG604910LD02P028E01E071R1_030.ab1   235 
Contig length: old 620, new 620

Contig length: old 620, new 620
New start: 0