No. words: 1291; after pruning: 1265


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:482)  471  0.21 0.00 0.21  UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1        1   483 (178)  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   (148)   482     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   630 
  156    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1     8 
  160  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   471 
  219    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1    71 
  227  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   404 
  235    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1    87 
  239  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   392 
  243    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1    95 
  247  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   384 
  255    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1   107 
  283  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   348 
  287    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1   139 
  391  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   240 
  519    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1   371 
  523  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1   108 
  527    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1   379 
  535  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1    96 
  539    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1   391 
  547  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1    84 
  559    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1   411 
  591  C UCD017R_H04_BG604910LD08P028E01E071R1_018.ab1    40 
  595    UCD017F_H04_BG604910LD08P028E01E071F1_018.ab1   447 
Contig length: old 808, new 809

Contig length: old 809, new 809
New start: 0