No. words: 1266; after pruning: 1240


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.5 (1,1:478)  473  0.00 0.00 0.00  UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1        2   479 (166)  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   (143)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   621 
  171    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1    29 
  175  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   447 
  191    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1    49 
  203  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   419 
  207    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1    65 
  227  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   395 
  231    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1    89 
  235  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   387 
  259    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1   117 
  395  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   227 
  467    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1   325 
  479  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   143 
  491    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1   349 
  499  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1   123 
  507    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1   365 
  527  C UCD017R_C05_BG604910LD11P028E01E071R1_043.ab1    95 
  543    UCD017F_C05_BG604910LD11P028E01E071F1_043.ab1   401 
Contig length: old 787, new 787

Contig length: old 787, new 787
New start: 0