No. words: 548; after pruning: 522


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Fail: (1)  141   -5.3 -5.3 (1,1:191)   20 15.91 0.00 0.00  UCD034F_D11_BG604910Ta22P036C11P028E071F1_089.ab1      142   185 (1)  C UCD034R_D11_BG604910Ta22P036C11P028E071R1_089.ab1   (311)    51     8 *
  Worst pair: offset 0 
LLR breakdown: discreps: -2.4 (<20 part: -2.4 (#=7), >20:0.0 (#=0); in HQ: -2.4, out HQ 0.0), match: 0.8  trail: -0.8  lead: -3.0  total: -5.4   20 15.91 0.00 0.00  UCD034F_D11_BG604910Ta22P036C11P028E071F1_089.ab1      142   185 (1)  C UCD034R_D11_BG604910Ta22P036C11P028E071R1_089.ab1   (311)    51     8 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.3       0        1

Gap   # merges  # failures
 size
141       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    UCD034R_D11_BG604910Ta22P036C11P028E071R1_089.ab1     1 
Contig length: old 362, new 362

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCD034F_D11_BG604910Ta22P036C11P028E071F1_089.ab1     1 
Contig length: old 186, new 186