No. words: 688; after pruning: 662


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 3.9 (1,1:292)  274  0.35 0.00 0.35  UCD033F_D09_BG604910Td02P028E01P036G101F1_073.ab1        2   289 (63)  C UCD033R_D09_BG604910Td02P028E01P036G101R1_073.ab1   (45)   291     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C UCD033R_D09_BG604910Td02P028E01P036G101R1_073.ab1   336 
   49    UCD033F_D09_BG604910Td02P028E01P036G101F1_073.ab1     5 
  288  C UCD033R_D09_BG604910Td02P028E01P036G101R1_073.ab1    49 
  316    UCD033F_D09_BG604910Td02P028E01P036G101F1_073.ab1   272 
Contig length: old 395, new 396

Contig length: old 396, new 396
New start: 0 
S Change at: 56; seg lengths: entry 1, contig 1