No. words: 687; after pruning: 661


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    4   -4.0 -4.0 (1,1:291)  235  4.86 0.00 0.35  UCD033F_A10_BG604910Td07P028E01P036G101F1_080.ab1        1   288 (62)  C UCD033R_A10_BG604910Td07P028E01P036G101R1_080.ab1   (46)   291     5 *
  Worst pair: offset 1 
LLR breakdown: discreps: -9.6 (<20 part: -9.6 (#=15), >20:0.0 (#=0); in HQ: -9.6, out HQ 0.0), match: 6.1  trail: -0.5  total: -4.0  235  4.86 0.00 0.35  UCD033F_A10_BG604910Td07P028E01P036G101F1_080.ab1        1   288 (62)  C UCD033R_A10_BG604910Td07P028E01P036G101R1_080.ab1   (46)   291     5 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C UCD033R_A10_BG604910Td07P028E01P036G101R1_080.ab1   337 
   59    UCD033F_A10_BG604910Td07P028E01P036G101F1_080.ab1    13 
  287  C UCD033R_A10_BG604910Td07P028E01P036G101R1_080.ab1    51 
  324    UCD033F_A10_BG604910Td07P028E01P036G101F1_080.ab1   279 
Contig length: old 395, new 395

Contig length: old 395, new 396
New start: 0 
S Change at: 52; seg lengths: entry 4, contig 4
I Change at: 324; seg lengths: entry 1, contig 0