No. words: 1021; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:420)  406  0.24 0.24 0.00  UCD021F_D04_BG605258Ta16P025C05P012H081F2_026.ab1        1   420 (106)  C UCD021R_D04_BG605258Ta16P025C05P012H081R2_026.ab1   (74)   421     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C UCD021R_D04_BG605258Ta16P025C05P012H081R2_026.ab1   495 
  406    UCD021F_D04_BG605258Ta16P025C05P012H081F2_026.ab1   332 
  410  C UCD021R_D04_BG605258Ta16P025C05P012H081R2_026.ab1    86 
  442    UCD021F_D04_BG605258Ta16P025C05P012H081F2_026.ab1   368 
  446  C UCD021R_D04_BG605258Ta16P025C05P012H081R2_026.ab1    50 
  450    UCD021F_D04_BG605258Ta16P025C05P012H081F2_026.ab1   376 
  464  C UCD021R_D04_BG605258Ta16P025C05P012H081R2_026.ab1    31 
  468    UCD021F_D04_BG605258Ta16P025C05P012H081F2_026.ab1   394 
  472  C UCD021R_D04_BG605258Ta16P025C05P012H081R2_026.ab1    23 
  484    UCD021F_D04_BG605258Ta16P025C05P012H081F2_026.ab1   410 
Contig length: old 600, new 600

Contig length: old 600, new 600
New start: 0