No. words: 1082; after pruning: 1056


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:486)  467  0.41 0.00 0.21  UCD021F_G02_BG605258Td03P025C05P012H081F2_004.ab1        1   487 (59)  C UCD021R_G02_BG605258Td03P025C05P012H081R2_004.ab1   (50)   486     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD021R_G02_BG605258Td03P025C05P012H081R2_004.ab1   536 
  529    UCD021F_G02_BG605258Td03P025C05P012H081F2_004.ab1   480 
Contig length: old 595, new 595

Contig length: old 595, new 596
New start: 0 
I Change at: 528; seg lengths: entry 1, contig 0